Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4292Put. Beta-glucosidase; Family membership. (371 aa)    
Predicted Functional Partners:
sce6254
Hypothetical protein.
  
 0.961
yfeW
Putative beta-lactamase precursor.
  
 0.959
sce1495
Putative beta-lactamase.
  
 0.957
sce8063
Uncharacterized protein conserved in bacteria.
    0.926
sce8443
Probable chitinase.
     
 0.903
sce4008
Hypothetical protein.
     
  0.900
hutI
Imidazolonepropionase; High confidence in function and specificity; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.788
pepA1
Probable cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.693
sce4290
Transcriptional accessory protein.
       0.605
mltD1
Murein transglycosylase; Family membership.
  
  
 0.580
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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