STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4292Put. Beta-glucosidase; Family membership. (371 aa)    
Predicted Functional Partners:
sce6254
Hypothetical protein.
  
 0.961
yfeW
Putative beta-lactamase precursor.
  
 0.959
sce1495
Putative beta-lactamase.
  
 0.957
sce8514
Hypothetical protein; Predicted phosphotransferase related to Ser/Thr protein kinases.
 
  
 0.938
sce8063
Uncharacterized protein conserved in bacteria.
  
 0.924
sce6074
Hypothetical protein; Predicted glycosyl hydrolase; Belongs to the glycosyl hydrolase 18 family.
     
 0.901
sce8443
Probable chitinase.
     
 0.901
sce4008
Hypothetical protein.
     
  0.900
hutI
Imidazolonepropionase; High confidence in function and specificity; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.791
pepA1
Probable cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.681
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.