Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4301Peptide ABC transporter, permease protein; Family membership. (325 aa)    
Predicted Functional Partners:
sce3647
Putative oligopeptide ABC transporter integral membrane protein.
 
 
 0.995
sce4300
Peptide ABC transporter, permease protein; Family membership.
 
 0.994
sce4298
ABC-type oligopeptide transport system, ATPase component; Family membership; Belongs to the ABC transporter superfamily.
 
 0.974
sce4299
Peptide ABC transporter, ATP-binding protein; Family membership; Belongs to the ABC transporter superfamily.
 
 0.974
oppC
Oligopeptide transport permease protein; High confidence in function and specificity.
 
 0.964
sce4302
ABC-type dipeptide transport system, periplasmic component.
 
 
 0.963
appC
Oligopeptide ABC transporter, permease component; Family membership.
 
 0.962
oppF
Oligopeptide ABC transporter ATP-binding protein; Family membership; Belongs to the ABC transporter superfamily.
 
 0.915
oppA2
Periplasmic oligopeptide-binding protein precursor.
 
 
 0.913
oppD
Oligopeptide ABC transporter ATP-binding protein; Family membership; Belongs to the ABC transporter superfamily.
 
 0.913
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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