Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce43115'-nucleotidase; Family membership. (618 aa)    
Predicted Functional Partners:
topB
DNA topoisomerase III; High confidence in function and specificity.
  
 
 0.810
prkA1
Protein kinase; Family membership.
  
     0.684
sce5368
Lanthionine synthetase C-like family protein.
  
     0.672
sce0201
Putative trypsin precursor.
  
 
   0.629
sce2724
Hypothetical protein.
  
     0.618
sce4312
Putative secreted protein.
       0.615
sce8339
Conserved hypothetical protein with Kelch motif.
  
   0.595
add
Putative Adenosine deaminase; Family membership.
  
  
  0.589
sce0533
Putative secreted trypsin-like serine protease.
  
 
   0.582
sce7480
Hypothetical protein.
  
     0.578
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.