Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4315Biopolymer transport protein, putative; Specificity unclear. (255 aa)    
Predicted Functional Partners:
exbD
Putative biopolymer transport protein (ExbD-like).
 
 
 0.981
tolR3
Biopolymer transport protein, ExbD/TolR family; Family membership.
 
 
 0.915
tolR5
tolR protein; High confidence in function and specificity.
 
 
 0.893
tolR2
Biopolymer transport protein, ExbD/TolR family; Specificity unclear.
 
 
 0.890
tolR1
Putative transport transmembrane protein; Specificity unclear.
 
 
 0.888
tolR4
tolR protein; High confidence in function and specificity.
 
 
 0.839
sce4450
Probable surface antigen.
  
   
 0.750
sce0613
Putative ABC transporter permease protein; Specificity unclear.
  
     0.711
sce1105
Putative exported protein.
  
   
 0.703
tonB1
Putative TonB protein; Specificity unclear.
  
 
 0.695
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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