STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4348Sodium/hydrogen exchanger family protein. (493 aa)    
Predicted Functional Partners:
kefX
Putative potassium-efflux system protein, Kef-family; Family membership.
 
     0.954
sce4350
Hypothetical membrane protein.
 
   
 0.821
glk
Glk protein; High confidence in function and specificity; Belongs to the bacterial glucokinase family.
       0.568
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.539
sce7217
Unnamed protein product; Family membership.
 
   
 0.534
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
 
    
 0.441
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
    0.437
sce7200
Hypothetical protein predicted by Glimmer/Critica.
 
     0.436
pilA3
Pilin; Specificity unclear.
 
     0.428
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.