STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kefXPutative potassium-efflux system protein, Kef-family; Family membership. (445 aa)    
Predicted Functional Partners:
sce4348
Sodium/hydrogen exchanger family protein.
 
     0.954
sce4350
Hypothetical membrane protein.
 
   
 0.875
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.722
sce2515
Hypothetical protein predicted by Glimmer/Critica.
  
     0.712
sce4262
Hypothetical protein.
  
    0.711
sce8175
Hypothetical protein predicted by Glimmer/Critica.
  
     0.693
sce4339
Hypothetical protein.
  
     0.677
sce0415
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.667
sce8043
Hypothetical protein predicted by Glimmer/Critica.
  
     0.662
sce8705
Hypothetical protein predicted by Glimmer/Critica.
  
     0.658
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.