Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sce4364Putative ATP-dependent helicase; Family membership. (867 aa)    
Predicted Functional Partners:
hrpA
ATP-dependent helicase HrpA; Family membership.
  
     0.620
cbiA
Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
   
    0.531
pbp3
Penicillin-binding protein.
  
     0.499
pepN2
Membrane alanyl aminopeptidase; High confidence in function and specificity.
  
     0.459
sce8548
ABC transporter, ATP-binding protein; Family membership.
  
     0.450
pgi
Glucose-6-phosphate isomerase; High confidence in function and specificity; Belongs to the GPI family.
 
     0.420
pepP
PepP protein; Family membership.
 
     0.411
sce4363
Hypothetical protein predicted by Glimmer/Critica.
       0.405
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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