Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clpS-2Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (132 aa)    
Predicted Functional Partners:
sce4390
ATPase with chaperone activity, two ATP-bindingdomains; Family membership; Belongs to the ClpA/ClpB family.
 
 
 0.972
aat
leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
  
 0.825
dps
Probable DNA-binding stress protein, Dps family; High confidence in function and specificity; Belongs to the Dps family.
   
 
 0.770
sce7884
Hypothetical DNA-binding ferritin-like protein,Dps family; Family membership; Belongs to the Dps family.
   
 
 0.770
sce0335
ATPase with chaperone activity, two ATP-bindingdomains; Family membership.
  
 
 0.646
clpA
Endopeptidase Clp; Family membership; Belongs to the ClpA/ClpB family.
  
 
 0.646
sce7162
ATP-dependent Clp protease, ATP-binding subunit,two ATP-binding domains; Family membership.
  
 
 0.646
clpB2
ATPase with chaperone activity, two ATP-bindingdomains; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.646
sce0334
ATP-dependent Clp protease, ATP-binding subunit, two ATP-binding domains; Family membership.
  
 
 0.644
himA
Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
  
 0.636
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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