Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4393Hypothetical protein predicted by Glimmer/Critica. (411 aa)    
Predicted Functional Partners:
sce3772
Hypothetical protein predicted by Glimmer/Critica.
 
     0.791
sce3587
Hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
     0.789
sce3586
Hypothetical protein predicted by Glimmer/Critica.
 
     0.783
sce7101
Uncharacterized protein conserved in bacteria.
  
    0.736
sce1578
Hypothetical protein; Predicted hydrolase of the alpha/beta superfamily.
 
     0.634
sce4394
Hypothetical protein predicted by Glimmer/Critica.
       0.530
sce4759
Hypothetical protein predicted by Glimmer/Critica.
  
     0.497
sce2072
Putative secreted protein.
  
     0.468
sce5834
Protein kinase; Family membership.
  
     0.466
nuiA
Putative sugar-non-specific nuclease inhibitor NuiA homolog.
  
     0.453
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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