Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
sce4411Putative secreted protein. (327 aa)    
Predicted Functional Partners:
sce6369
Putative Pentalenene synthase.
  
    0.757
geoA
Putative terpene cyclase; Catalyzes the conversion of (2E,6E)-farnesyl diphosphate (FPP) to yield the bicyclic sesquiterpene eremophilene via a 1,10- cyclization, which requires the abstraction of the pyrophosphate from FPP to yield the (E,E)-germacradienyl cation. The only accepted substrate is farnesyl diphosphate (FPP).
  
    0.732
sce9313
Hypothetical protein predicted by Glimmer/Critica.
  
     0.727
cbhA
Cellulose 1,4-beta-cellobiosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase family 6.
  
     0.708
sce0998
Hypothetical protein predicted by Glimmer/Critica.
  
     0.705
sce0330
Hypothetical protein.
  
     0.701
sce5436
Hypothetical protein predicted by Glimmer/Critica.
  
     0.701
sce3277
Putative Esterase; Esterase with broad substrate specificity, that may be involved in degradation of plant biomass present in the habitat of S.cellulosum. In vitro, displays acetyl esterase activity, aryl esterase activity, paraben esterase activity, carboxyl esterase activity, poly-3-hydroxybutyric acid (PHB) depolymerase activity, and a low feruloyl esterase activity. Does not possess any paraoxonase activity. Is able to bind to multiple substrate molecules simultaneously.
  
     0.693
sce4184
Hypothetical protein predicted by Glimmer/Critica.
  
     0.689
sce6739
Putative lipase; Family membership.
  
     0.684
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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