Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4442Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain). (556 aa)    
Predicted Functional Partners:
sce4441
Putative regulatory protein.
 
  
 0.874
sce4440
Hypothetical protein.
       0.797
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.784
sce1392
Uncharacterized membrane protein.
 
  
 0.755
sce8015
Hypothetical protein.
 
    0.742
sce0415
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
    0.729
sce5904
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
  
     0.729
sce1393
Hypothetical protein; Function unclear.
 
    0.724
sce8043
Hypothetical protein predicted by Glimmer/Critica.
  
     0.720
sce0416
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
  
     0.718
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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