Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4453Transcriptional regulator, AraC family. (281 aa)    
Predicted Functional Partners:
sce2840
Hypothetical protein; COG: ATP-dependent nuclease, subunit B.
  
     0.620
sce7388
Predicted membrane protein.
  
     0.619
sce2932
Uncharacterized protein conserved in bacteria.
  
     0.607
sce3776
Hypothetical protein.
  
     0.597
sce3873
WD-repeat protein.
  
     0.593
sce6585
Predicted membrane protein.
  
     0.579
sce4535
Hypothetical protein predicted by Glimmer/Critica.
  
     0.574
sce2592
Piccolo protein; High confidence in function and specificity.
  
     0.568
sce7812
Hypothetical protein predicted by Glimmer/Critica.
  
     0.567
sce7289
Hypothetical protein; FOG: WD40 repeat.
  
     0.560
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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