Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce4458Putative membrane protein. (334 aa)    
Predicted Functional Partners:
lipH
Putative lipase activator protein; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.644
lip
Triacylglycerol lipase.
  
    0.627
sce8975
Hypothetical protein.
  
    0.614
sce3539
Hypothetical protein.
  
     0.587
sce0309
Putative hydrolase; Function unclear.
  
     0.564
lipX
Similar to lactonizing lipase precursor.
  
    0.544
sce2045
Hypothetical protein.
  
     0.539
rocA
1-pyrroline-5-carboxylate dehydrogenase; High confidence in function and specificity.
  
  
 0.533
sce1637
GMC oxidoreductase; Family membership.
  
     0.531
sce0852
Putative oxidoreductase; Family membership.
  
     0.484
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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