Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilBType IV pilus biogenesis protein PilB. (566 aa)    
Predicted Functional Partners:
pulF
PulF protein; Type II secretory pathway component PulF.
 
 0.988
gspF
General secretion pathway protein F.
 
 
 0.975
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 
 0.922
pilQ
Type 4 fimbrial biogenesis protein PilQ; Specificity unclear.
 
 
 
 0.878
pilD
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.871
pilT2
Twitching motility protein.
 
  
0.850
pilO
PilO protein; High confidence in function and specificity.
  
 
 0.795
sce0299
LysM domain-containing protein; Unnamed protein product; Function unclear.
    
   0.731
gspG
General secretion pathway protein G.
  
 
 0.701
pilN
PilN protein; Tfp pilus assembly protein PilN.
  
 
 0.673
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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