Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprFOuter membrane protein; Family membership. (386 aa)    
Predicted Functional Partners:
sce4470
Hypothetical protein predicted by Glimmer/Critica.
       0.813
sce1706
Outer membrane protein.
  
 
   0.776
sce5128
Putative outer membrane protein.
  
 
   0.775
sce6431
Putative outer membrane protein.
  
 
   0.769
sce3630
WD-repeat protein.
  
   0.558
sce4472
Hypothetical protein predicted by Glimmer/Critica.
       0.528
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
       0.521
tolQ2
TolQ protein; Specificity unclear.
 
   
 0.474
tolQ3
tolQ protein; High confidence in function and specificity.
 
   
 0.416
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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