STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4500Hypothetical protein predicted by Glimmer/Critica. (768 aa)    
Predicted Functional Partners:
pgiY
Bacteriophage phiC31 resistance gene; Family membership.
  
    0.828
sce0272
Hypothetical protein.
  
    0.781
sce0273
Hypothetical protein.
  
    0.781
sce4499
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce4874
Hypothetical protein.
  
    0.768
sce0899
Putative fibronectin-binding protein-like protein A.
  
    0.665
sce5256
Fibronectin/fibrinogen-binding protein,putative.
  
    0.665
sce0319
Probable DNA modification methyltransferase.
  
  
 0.445
sce5520
Probable type I restriction-modification system,M subunit.
  
  
 0.445
sce7676
Putative DNA methylase; Family membership.
  
  
 0.445
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.