Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4515Hypothetical protein predicted by Glimmer/Critica. (233 aa)    
Predicted Functional Partners:
sce4516
Putative oxidoreductase, iron-sulfur binding; Family membership.
 
 
 
 0.986
hmoA
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 
 0.975
sce4517
Hypothetical protein.
 
 
 
 0.958
sce2646
Oxidoreductase; Specificity unclear.
  
 0.950
sce4520
Hypothetical protein.
 
 
 0.932
moz
Moz protein; High confidence in function and specificity.
 
 
 
 0.922
sce4518
Hypothetical protein; Nitric oxide reductase large subunit.
 
 
 
 0.918
sce7589
Conserved hypothetical membrane protein.
 
 
 0.900
sce4519
Hypothetical protein; Cytochrome c mono- and diheme variants.
 
 
 
 0.891
sce4525
Putative Cytochrome-c oxidase; Family membership.
 
 0.871
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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