Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4519Hypothetical protein; Cytochrome c mono- and diheme variants. (120 aa)    
Predicted Functional Partners:
sce4516
Putative oxidoreductase, iron-sulfur binding; Family membership.
 
 
 0.978
sce4525
Putative Cytochrome-c oxidase; Family membership.
 
 
 0.969
sce4520
Hypothetical protein.
 
 
 
 0.964
hmoA
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
 
 0.964
sce4523
Cytochrome-c oxidase; Family membership.
 
 
 0.957
sce7592
Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.948
sce4522
Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems.
 
   
 0.945
sce4517
Hypothetical protein.
 
 
 
 0.917
sce4524
Cytochrome-c oxidase; Family membership; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.917
sce4515
Hypothetical protein predicted by Glimmer/Critica.
 
 
 
 0.891
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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