STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4566Amino acid transporter; Family membership. (495 aa)    
Predicted Functional Partners:
sce4916
Putative amino acid permease; Family membership.
  
     0.710
treS
Trehalose synthase; High confidence in function and specificity.
    
 0.701
sce3064
Alpha amylase, catalytic region; Family membership.
    
 0.701
amyA
Alpha-amylase; High confidence in function and specificity.
    
 0.701
sce6847
Glycosyl hydrolase, family; Family membership; Belongs to the glycosyl hydrolase 13 family.
    
 0.701
sce7780
Alpha-amylase family protein; Family membership.
    
 0.701
pacL1
Cation-transporting ATPase, E1-E2 family; Specificity unclear.
   
 
 0.653
gltP
Proton glutamate symport protein; High confidence in function and specificity; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
 
 
 0.436
sce4565
Putative spore coat protein.
     
 0.427
trpC
Indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase; High confidence in function and specificity; Belongs to the TrpC family.
    
 
 0.418
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.