Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pacL1Cation-transporting ATPase, E1-E2 family; Specificity unclear. (904 aa)    
Predicted Functional Partners:
sce4566
Amino acid transporter; Family membership.
   
 
 0.656
sce0141
Uncharacterized protein conserved in bacteria.
   
    0.465
sce1885
Uncharacterized protein conserved in bacteria.
   
    0.465
sce3435
Hypothetical protein; Function unclear; Belongs to the UPF0276 family.
   
    0.465
sce6052
Uncharacterized protein conserved in bacteria.
   
    0.465
sce7706
Uncharacterized protein conserved in bacteria.
   
    0.465
sce0124
Putative sodium:solute transport protein; Specificity unclear.
  
 
 0.453
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
   
 
 0.444
sce8046
Putative neutral zinc metallopeptidases; Belongs to the peptidase M50B family.
 
    0.428
rpsH
30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.420
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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