STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4569Hypothetical protein. (206 aa)    
Predicted Functional Partners:
speB1
Agmatinase; Family membership; Belongs to the arginase family.
    
 0.916
sce4400
Putative agmatinase; Family membership; Belongs to the arginase family.
    
 0.916
speB2
Agmatinase; Family membership; Belongs to the arginase family.
    
 0.916
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
     
  0.900
astA
Arginine N-succinyltransferase; Family membership.
     
  0.900
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
  0.900
argH
Argininosuccinate lyase; High confidence in function and specificity.
     
  0.800
sce4568
Hypothetical protein predicted by Glimmer/Critica.
       0.475
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.