STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4572Putative cyclic nucleotide-binding protein. (155 aa)    
Predicted Functional Partners:
phnX
Cytochrome-c3 hydrogenase.
 
     0.951
sce4574
Putative hydrogenase; Family membership.
 
     0.935
hoxH
Hypothetical protein; Coenzyme F420-reducing hydrogenase alpha subunit.
 
   
 0.935
sce4573
Hydroxylase or oxidoreductase; Family membership.
 
     0.930
hupD
Hydrogenase expression/formation protein hupD.
 
     0.814
hypC
Hydrogenase expression/formation protein; High confidence in function and specificity.
 
     0.758
hypD
Hydrogenase expression/formation protein hypD2; Belongs to the HypD family.
  
    0.727
hypF
Hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
       0.724
hypA
Hydrogenase nickel insertion protein HypA,putative; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.697
hypE
Hydrogenase expression/formation protein HypE.
       0.573
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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