STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4573Hydroxylase or oxidoreductase; Family membership. (283 aa)    
Predicted Functional Partners:
phnX
Cytochrome-c3 hydrogenase.
  
 0.995
sce4574
Putative hydrogenase; Family membership.
 
   
 0.961
hoxH
Hypothetical protein; Coenzyme F420-reducing hydrogenase alpha subunit.
 
   
 0.961
yeiA
Dihydropyrimidine dehydrogenase; Family membership.
  
 
 0.937
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.933
sce4572
Putative cyclic nucleotide-binding protein.
 
     0.930
hupD
Hydrogenase expression/formation protein hupD.
 
    0.896
carA1
Carbamoyl-phosphate synthase; Family membership.
  
 
 0.852
carA2
Carbamoyl-phosphate synthase; Family membership; Belongs to the CarA family.
  
  
 0.848
pyrB
Aspartate carbamoyltransferase; Family membership; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.848
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.