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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4583Hypothetical protein. (241 aa)    
Predicted Functional Partners:
sce4584
Hypothetical protein predicted by Glimmer/Critica.
 
     0.797
sce1857
Hypothetical protein predicted by Glimmer/Critica.
  
     0.678
sce8531
Hypothetical protein.
  
     0.646
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.518
sce4850
Hypothetical protein predicted by Glimmer/Critica.
 
     0.486
sce0689
Hypothetical protein; Fe-S oxidoreductase.
  
     0.454
sce1139
Hypothetical protein.
  
     0.451
sce0333
Hypothetical protein.
  
     0.432
sce4473
Transposase, IS4 family; High confidence in function and specificity.
  
     0.426
sce4158
Transposase.
  
     0.423
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.