STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4584Hypothetical protein predicted by Glimmer/Critica. (536 aa)    
Predicted Functional Partners:
sce4583
Hypothetical protein.
 
     0.797
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.771
sce8531
Hypothetical protein.
  
     0.767
sce1857
Hypothetical protein predicted by Glimmer/Critica.
  
     0.765
sce1139
Hypothetical protein.
  
     0.763
mutS2
DNA mismatch repair protein; High confidence in function and specificity.
 
     0.756
sce7033
Hypothetical protein.
  
     0.719
sce6012
Two-component sensor histidine kinase; Family membership.
  
     0.715
sce3540
Uncharacterized protein conserved in cyanobacteria.
  
     0.700
sce4473
Transposase, IS4 family; High confidence in function and specificity.
  
     0.678
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.