STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfBAlpha-L-arabinofuranosidase precursor; High confidence in function and specificity. (540 aa)    
Predicted Functional Partners:
sce6693
O-Glycosyl hydrolase; Specificity unclear.
 
   0.972
xysA
Endo-1,4-beta-xylanase; High confidence in function and specificity.
 
   0.964
xynB2
Beta-xylanase.
 
   0.936
sce6823
NRPS/PKS hybrid.
  
  
 0.898
mxcF
Isochorismatase; High confidence in function and specificity.
  
  
 0.834
sce2693
Putative beta-xylosidase; Family membership.
 
     0.829
sce0965
Glycosyl hydrolase family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.812
sce2869
Putative secreted protein; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.806
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.797
sce1896
Putative esterase.
 
 
   0.789
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.