STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB3Endo-1,4-beta-xylanase; Family membership. (402 aa)    
Predicted Functional Partners:
aguA
Xylan alpha-1,2-glucuronidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.779
sce6752
Hypothetical protein.
     0.774
sce4600
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce0998
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.771
sce9318
No hits; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.771
manB
Mannan endo-1,4-beta-mannosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.766
sce1489
Specificity unclear.
  
 
   0.763
pelA
PelA protein; High confidence in function and specificity.
  
   
 0.763
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
   
 0.756
pelB
PelB protein; High confidence in function and specificity.
  
   
 0.755
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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