STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpoChloride peroxidase; High confidence in function and specificity. (466 aa)    
Predicted Functional Partners:
sce7172
ABC transporter, nucleotide binding/ATPase protein.
  
  
 0.649
sce2988
Outer membrane efflux protein; Specificity unclear.
  
  
 0.514
sce8316
Competence protein.
  
  
 0.470
sce6816
Hypothetical membrane protein.
  
     0.433
sce2294
Putative secreted protein.
  
     0.431
sce7171
ABC transporter ATP-binding protein.
  
  
 0.426
sce6387
Putative secreted protein.
 
     0.421
sce7176
Hypothetical protein; COG: Biotin carboxylase.
  
     0.411
sce2649
General stress protein.
  
     0.410
sce3969
General stress protein.
  
     0.410
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.