Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4636Hypothetical protein predicted by Glimmer/Critica; Specificity unclear. (511 aa)    
Predicted Functional Partners:
sce4637
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce2686
Hypothetical WD-repeat protein; Family membership.
  
   
 0.660
chlG
Putative Octaprenyltransferase; Family membership.
 
   
 0.651
sce0582
Hypothetical protein.
  
     0.631
sce4635
Cytochrome P450 CYP259A1; Family membership; Belongs to the cytochrome P450 family.
 
 
 
 0.624
sce9048
Hypothetical protein; SAM-dependent methyltransferases.
  
     0.607
sce3623
Hypothetical protein; FOG: WD40 repeat.
 
   
 0.595
sce4206
Diphosphomevalonate decarboxylase; Family membership.
   
 
 0.590
sce5403
Putative polyvinylalcohol dehydrogenase.
  
     0.565
sce0153
Putative secreted protein.
  
     0.554
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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