Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4670Hypothetical protein. (124 aa)    
Predicted Functional Partners:
sce4671
Rhs element Vgr protein.
 
   
 0.871
sce4669
FHA domain protein.
 
     0.834
sce4665
Rhs element Vgr protein.
 
   
 0.703
sce1839
Hypothetical protein.
 
     0.690
sce8036
Uncharacterized protein conserved in bacteria.
 
   
 0.683
sce1568
Hypothetical protein.
  
     0.682
sce2105
Hypothetical protein predicted by Glimmer/Critica.
 
     0.677
sce2110
Hypothetical protein.
  
     0.650
sce4668
Hypothetical protein.
       0.639
sce2082
Hypothetical protein.
 
     0.638
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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