STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4692Hypothetical protein. (229 aa)    
Predicted Functional Partners:
sce4691
Hypothetical protein.
 
    0.987
sce7839
Hypothetical protein predicted by Glimmer/Critica.
 
     0.765
sce1797
Hypothetical protein predicted by Glimmer/Critica.
 
     0.715
sce7841
Spore coat protein H; Family membership.
 
     0.706
sce7840
Metal ion efflux outer membrane protein family protein, putative.
 
     0.703
sce7040
Hypothetical protein predicted by Glimmer/Critica.
  
     0.614
sce1521
Hypothetical protein.
  
  
 0.574
sce7014
Hypothetical protein.
  
  
 0.574
sce8664
Putative membrane protein.
  
  
 0.574
sce6579
Uncharacterized protein conserved in cyanobacteria.
  
     0.553
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.