Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pucIPutative Allantoin permease. (513 aa)    
Predicted Functional Partners:
dht
Dihydropyrimidinase; Family membership.
 
  
 0.888
allB
Allantoinase; Family membership.
 
  
 0.803
yeiA
Dihydropyrimidine dehydrogenase; Family membership.
 
  
 0.760
sce6400
CN hydrolase domain-containing protein; Unnamed protein product; Specificity unclear.
 
     0.628
sce4023
Putative uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.542
alc
Putative Allantoicase; Family membership; Belongs to the allantoicase family.
 
  
 0.542
yedX
Transthyretin-related protein; Family membership; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.487
sce5882
Hypothetical protein.
 
     0.470
sce4722
Anti-anti sigma factor protein.
       0.432
gltB2
Glutamate synthase [NADPH]; Family membership.
 
   
 0.430
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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