STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4766LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
sce3542
Transcriptional regulator, LysR family; Function unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.766
sce2273
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.764
sce8586
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.761
sce1964
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.689
sce4120
LysR-family transcriptional regulator; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.661
oxyR
Activator, hydrogen peroxide-inducible genes; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.656
sce1194
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.648
entB
Putative isochorismatase; Specificity unclear.
       0.538
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.