STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate:pyruvate aminotransferase; Family membership. (371 aa)    
Predicted Functional Partners:
sce2550
Aldehyde dehydrogenase; Specificity unclear; Belongs to the aldehyde dehydrogenase family.
  
 0.919
pepM
Phosphoenolpyruvate mutase; High confidence in function and specificity.
 
  
 0.743
sce7308
Sugar nucleotidyltransferase; Family membership.
    0.700
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.699
purD
Phosphoribosylamine--glycine ligase; Family membership; Belongs to the GARS family.
  
  
 0.674
comD
ComD protein; Family membership.
 
   
 0.664
sce7307
TPP_enzyme_C domain-containing protein; Unnamed protein product; Family membership.
 
 
 0.646
sce4778
Protein kinase; Family membership.
  
    0.636
idi
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.613
sce7671
(S)-2-hydroxy-acid oxidase; Family membership.
  
 0.613
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.