STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfbEPutative enzyme; Belongs to the DegT/DnrJ/EryC1 family. (381 aa)    
Predicted Functional Partners:
sce0875
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.831
sce7345
NDP-sugar acetyltransferase; Specificity unclear.
  
 0.816
galE5
GalE5 protein; High confidence in function and specificity.
 
  
 0.795
sce7613
Putative oxidoreductase.
  
 0.765
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.673
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.645
sce6684
Glycosyltransferase; Specificity unclear.
 
  
 0.627
sce0882
Glycosyltransferase; Specificity unclear.
 
  
 0.571
sce3584
Glycosyltransferase; Function unclear.
  
 0.550
sce1961
Glycosyltransferase; Function unclear.
  
 0.542
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.