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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbEPutative enzyme; Belongs to the DegT/DnrJ/EryC1 family. (381 aa)    
Predicted Functional Partners:
galE5
GalE5 protein; High confidence in function and specificity.
  
 0.889
sce7613
Putative oxidoreductase.
  
 0.867
sce0875
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.830
sce7345
NDP-sugar acetyltransferase; Specificity unclear.
  
 0.828
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.787
galE6
Probable UDP-glucose 4-epimerase; Family membership.
 
  
 0.715
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.670
sce6684
Glycosyltransferase; Specificity unclear.
 
  
 0.638
sce0887
Oxidoreductase; Family membership.
 
  
 0.637
sce2390
Putative dehydrogenases; Family membership.
 
  
 0.598
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.