Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
galE5GalE5 protein; High confidence in function and specificity. (332 aa)    
Predicted Functional Partners:
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.890
sce3055
Hypothetical protein with NDP-sugar oxidoreductase domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.883
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.883
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
  
  
 0.850
mpg
Putative sugar-phosphate nucleotide transferase; High confidence in function and specificity.
 
  
 0.826
sce3948
Polysaccharide biosynthesis protein, putative; Family membership.
 
  
 0.817
yfbE
Putative enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.795
wzx1
Oligosaccharyltransferase; Specificity unclear.
  
  
 0.781
wzx3
Oligosaccharyltransferase involved in polysaccharide biosynthesis; Specificity unclear.
  
  
 0.756
sce1109
Predicted integral membrane protein; Family membership.
  
  
 0.751
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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