Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4809Hypothetical protein; FOG: PKD repeat. (488 aa)    
Predicted Functional Partners:
sce1184
Hypothetical protein.
  
     0.774
sce5576
Hypothetical protein predicted by Glimmer/Critica.
  
     0.774
sce7893
Hypothetical protein predicted by Glimmer/Critica.
  
     0.774
sce4810
Hypothetical protein.
       0.773
sce5641
Hypothetical protein.
  
     0.773
sce2674
Hypothetical protein; Superfamily II RNA helicase.
  
     0.772
sce0869
Hypothetical protein predicted by Glimmer/Critica.
  
     0.771
sce2682
Cell surface glycoprotein (s-layer protein) related protein.
  
     0.753
sce6396
Hypothetical protein predicted by Glimmer/Critica.
  
     0.549
sce0519
Putative secreted protein.
  
     0.481
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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