Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4825Probable outer membrane protein; Family membership. (533 aa)    
Predicted Functional Partners:
sce2988
Outer membrane efflux protein; Specificity unclear.
  
  
0.912
sce3619
Probable outer membrane efflux lipoprotein; Function unclear.
     
 0.901
sce2849
Outer membrane efflux protein; Specificity unclear.
     
  0.900
sce1627
RND family efflux transporter; Specificity unclear; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.884
arcA
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.884
sce1422
Probable multidrug efflux membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.861
sce1421
MFP family efflux transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.836
sce1628
RND family efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.836
acrB
Probable membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.836
sce5284
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.836
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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