STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4850Hypothetical protein predicted by Glimmer/Critica. (287 aa)    
Predicted Functional Partners:
sce8531
Hypothetical protein.
  
     0.738
sce5370
Fibronectin type III domain protein.
  
     0.666
sce5854
Putative type IV pilus assembly protein; Family membership.
  
     0.653
sce5957
DNA helicase; Unnamed protein product; Hypothetical protein.
  
     0.653
sce5338
Protein kinase; Family membership.
  
     0.643
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
 
     0.637
sce8729
Protein kinase; Family membership.
  
     0.626
sce9258
Hypothetical protein.
 
     0.626
sce4851
Transcriptional regulator, TetR family; Family membership.
       0.613
sce3603
PE_PGRS family protein.
  
     0.609
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.