STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4855Probable methyltransferase; Family membership. (230 aa)    
Predicted Functional Partners:
ubiE3
SAM-dependent methyltransferase.
  
     0.701
sce2711
Putative SAM-dependent methyltransferase; Family membership.
  
     0.665
ubiE1
Quinone methyltransferase.
  
     0.632
ubiE4
Ubiquinone/menaquinone biosynthesis methyltransferase; Family membership.
  
     0.551
sce5622
Putative methyltransferase.
  
     0.526
sce3453
SAM-dependent methyltransferase; Family membership.
  
     0.513
sce4853
Hypothetical protein.
       0.509
sce4854
Hypothetical protein predicted by Glimmer/Critica.
       0.509
sce6429
Putative SAM-dependent methyltransferase.
  
     0.504
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.478
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.