Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4860Hypothetical protein. (514 aa)    
Predicted Functional Partners:
sce0966
Hypothetical protein.
 
 
 0.607
sce1498
Putative Endoglucanase A, secreted; Family membership.
  
   
 0.586
sce4859
Transcriptional regulator, TetR family; Family membership.
       0.519
sce1247
Hypothetical protein, conserved.
 
   
 0.512
sce5722
Hypothetical endo-1,4-beta-glucanase.
  
    0.498
sce0771
Hypothetical protein.
  
     0.485
sce4295
Uncharacterized protein with SCP/PR1 domains.
  
     0.483
sce4015
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.469
galA
Arabinogalactan endo-1,4-beta-galactosidase; High confidence in function and specificity.
 
  
 0.467
manB
Mannan endo-1,4-beta-mannosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.455
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.