Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4868Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity. (255 aa)    
Predicted Functional Partners:
sce4869
NDP-hexose 4,6-dehydratase; High confidence in function and specificity.
 0.998
algC
AlgC protein; High confidence in function and specificity.
  
 
 0.933
sce3719
Nucleotidyl transferase.
 
  
  0.923
glgP
Phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.918
pgm3
Pgm3 protein; High confidence in function and specificity.
   
 0.917
sce8937
Putative glycosyltransferase; Family membership.
  
 0.910
sce3087
Hypothetical protein.
    
 0.909
sce0351
4-alpha-glucanotransferase homolog; Family membership.
    
 0.907
malQ2
4-alpha-glucanotransferase; High confidence in function and specificity.
    
 0.907
cbpA
CbpA protein; High confidence in function and specificity.
    
  0.904
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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