STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4869NDP-hexose 4,6-dehydratase; High confidence in function and specificity. (357 aa)    
Predicted Functional Partners:
sce4868
Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity.
 0.998
sce4870
NDP-sugar oxidoreductase; Specificity unclear.
 
     0.878
sce4866
Integral membrane glycosyltransferase; Function unclear.
  
    0.774
sce4865
Putative exported protein.
       0.773
celH
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 26 family.
       0.773
sce3745
Sugar phosphate nucleotidyltransferase; Family membership.
 
 
 0.691
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.487
sce4862
Hypothetical protein predicted by Glimmer/Critica.
       0.483
sce4863
Putative membrane protein.
       0.483
sce4864
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.483
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.