STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4870NDP-sugar oxidoreductase; Specificity unclear. (312 aa)    
Predicted Functional Partners:
sce4868
Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity.
 
 
 0.897
sce4869
NDP-hexose 4,6-dehydratase; High confidence in function and specificity.
 
     0.866
sce4866
Integral membrane glycosyltransferase; Function unclear.
  
    0.778
sce4865
Putative exported protein.
       0.773
celH
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 26 family.
       0.773
galE2
GalE2 protein; High confidence in function and specificity.
  
     0.753
sce2249
Epimerase domain-containing protein; Unnamed protein product; Family membership.
  
     0.752
mpg
Putative sugar-phosphate nucleotide transferase; High confidence in function and specificity.
 
 
 0.717
sce4241
Glycosyltransferase; Function unclear.
  
    0.637
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.620
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.