STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB4Xylan 1,4-beta-xylosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family. (523 aa)    
Predicted Functional Partners:
sce3304
Put. Xylosidase/arabinosidase.
  
  
 
0.929
yagH
Beta-xylosidase (14-beta-D-xylan xylohydrolase) (Xylan 14-beta-xylosidase); High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.903
xylA
Xylose isomerase; High confidence in function and specificity; Belongs to the xylose isomerase family.
 
 
 0.879
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.843
sce1246
Putative Alpha-arabinofuranosidase; Family membership.
 
   
 0.589
sce1002
Putative glycosyl hydrolase; Family membership.
 
   
 0.525
srfJ
Glucosylceramidase (O-glycosyl hydrolase); Specificity unclear; Belongs to the glycosyl hydrolase 30 family.
 
  
 0.490
galA
Arabinogalactan endo-1,4-beta-galactosidase; High confidence in function and specificity.
  
   
 0.477
sce2691
Putative secreted protein.
 
     0.466
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.460
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.