STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4887Putative Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. (244 aa)    
Predicted Functional Partners:
sce4888
Probable glycolipid synthase; Family membership.
  
 0.950
sce6823
NRPS/PKS hybrid.
  
 0.950
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.926
sce0345
NRPS/PKS hybrid; Family membership.
  
 0.923
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.917
sce0820
Polyketide synthase; Family membership; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.906
acpS
Holo-acyl-carrier-protein-synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
     
 0.905
sce5058
4'-phosphopantetheinyl transferase; High confidence in function and specificity; Belongs to the P-Pant transferase superfamily.
     
  0.900
sce3192
Polyketide synthase; Family membership.
  
 0.865
chiA
Putative acyltransferase/oxidoreductase; Specificity unclear.
  
  
 0.864
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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