Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4890Hypothetical protein; Family membership. (205 aa)    
Predicted Functional Partners:
sce4891
Protein kinase; Family membership.
 
 
   0.802
sce6178
Uncharacterized protein conserved in bacteria.
  
     0.611
sce8289
Putative secreted protein.
  
     0.606
sce4889
Transcriptional regulator, MarR family.
       0.568
sce6494
Acetyltransferase, GNAT family; High confidence in function and specificity.
  
     0.544
sce0967
Hypothetical protein.
  
    0.540
sce4645
Conserved hypothetical secreted protein.
  
     0.483
sce1335
Hypothetical protein.
  
     0.477
sce4903
Hypothetical protein.
  
     0.473
ilvD3
Dihydroxy-acid dehydratase; Family membership; Belongs to the IlvD/Edd family.
  
     0.470
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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