STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4897Probable FAD-dependent monooxygenase. (408 aa)    
Predicted Functional Partners:
sce4896
Hypothetical protein; Belongs to the UPF0311 family.
 
     0.943
sce4807
Probable FAD-dependent monooxygenase; Function unclear.
  
  
 
0.904
sce7525
Putative hydroxylase.
  
  
 
0.900
sce4895
Putative secreted protein.
       0.605
sce5579
Putative branched-chain amino acid transport system substrate-binding protein; Family membership.
   
    0.579
sce8926
Hypothetical protein.
  
     0.577
boxC
Enoyl-CoA hydratase/isomerase; Family membership.
  
 
   0.534
yfcX
Isomerases acting on hydroxy acids and derivatives; Family membership.
  
   
 0.519
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
   
  
 0.455
mhpT
Permease of the major facilitator superfamily,putative 3-hydroxyphenylpropionate transporter; Specificity unclear.
       0.437
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.