STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4902Hypothetical protein; Mismatch repair ATPase (MutS family). (541 aa)    
Predicted Functional Partners:
sce4903
Hypothetical protein.
 
     0.908
sce7592
Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.845
sce4516
Putative oxidoreductase, iron-sulfur binding; Family membership.
  
 
 0.785
hmoA
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.785
sce0129
Hypothetical protein.
  
     0.775
sce0554
Putative secreted protein.
  
     0.775
sce0736
Hypothetical protein-signal peptide prediction.
  
     0.775
sce0795
Unnamed protein product.
  
     0.775
sce0994
Hypothetical protein; Family membership.
  
     0.775
sce1021
Conserved exported protein.
  
     0.775
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.