STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4911Cytochrome c peroxidase family protein,putative; Family membership. (721 aa)    
Predicted Functional Partners:
ccpR
Cytochrome c551 peroxidase precursor; High confidence in function and specificity.
  
     0.748
sce7434
Unnamed protein product; Family membership.
  
     0.746
sce6991
Protein kinase; Family membership.
  
     0.703
sce2614
Hypothetical protein; Cytochrome c peroxidase.
  
 
   0.623
sce1793
Hypothetical protein; Family membership.
  
     0.596
sce8814
Putative cytochrome c peroxidase; Family membership.
  
     0.595
sce2065
Hypothetical protein.
  
     0.538
sce6373
methionyl-tRNA formyltransferase; Family membership.
  
     0.536
sce1601
Hypothetical protein.
  
     0.486
sce8700
Putative membrane protein.
  
     0.481
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.